References

Plasmodiophorid references

Adams MJ, Ward E, Mutasa ES. 1994. Variabilité du genre Polymyxa: Études biologiques et genomiques. Recueil des communications, Mosaiques des céréales transmises par Polymyxa graminis Led., Blois, 7-8 Avril 1994, 27-28.

Archibald JM, Keeling PJ. 2004. Actin and ubiquitin protein sequences support a cercozoan/foraminiferan ancestry for the plasmodiophorid plant pathogens. Journal of Eukaryotic Microbiology 51: 113-118.

Arie T, Namba S, Yamashita S, Doi Y. 1988. Detection of resting spores of Plasmodiophora brassicae Woron. from soil and root by fluorescent-antibody technique. Annals of the Phytopathological Society of Japan 54: 242-245.

Arnold DL, Blakesley D, Clarkson JM. 1996. Evidence for the growth of Plasmodiophora brassicae in vitro. Mycological Research 100: 535-540.

Bell KS, Roberts J, Verrall S, Cullen DW, Williams NA, Harrison JG, Toth IK, Cooke DEL, Duncan JM, Claxton JR. 1999. Detection and quantification of Spongospora subterranea f. sp. subterranea in soils and on tubers using specific PCR primers. European Journal of Plant Pathology 105: 905-915.

Bryan RJ, Trese AT, Braselton JP. 1996. Molecular karyotypes for the obligate, intracellular, plant pathogens, Plasmodiophora brassicae and Spongospora subterranea. Mycologia 88: 358-360.

Bryngelsson T, Gustafsson M, Green B, Lind C. 1988. Uptake of host DNA by the parasitic fungus Plasmodiophora brassicae. Physiological and Molecular Plant Pathology 33: 163-171.

Buhariwalla H, Greaves S, Magrath R, Mithen R. 1995. Development of specific PCR primers for the amplification of polymorphic DNA from the obligate root pathogen Plasmodiophora brassicae. Physiological and Molecular Plant Pathology 47: 83-94.

Buhariwalla H, Mithen R. 1995. Cloning of a Brassica repetitive DNA element from resting spores of Plasmodiophora brassicae. Physiological and Molecular Plant Pathology 47: 95-101.

Bulman SR, Marshall JW. 1998. Detection of Spongospora subterranea in potato tuber lesions using the polymerase chain reaction (PCR). Plant Pathology 47: 759-766.

Bulman SR, Kuhn SF, Marshall JW, Schnepf E. 2001. A phylogenetic analysis of the SSU rRNA from members of the Plasmodiophorida and Phagomyxida. Protist 152: 43-51.

Castlebury LA. 1994. Molecular systematics of Plasmodiophora brassicae. Ph.D. thesis, University of Illinois at Urbana-Champaign.

Castlebury LA, Domier LL. 1998. Small subunit ribosomal RNA gene phylogeny of Plasmodiophora brassicae. Mycologia 90: 102-107.

Cavalier-Smith T, Chao EE. 1997. Sarcomonad ribosomal RNA sequences, rhizopod phylogeny, and the origin of euglyphid amoebae. Archiv für Protistenkunde 147: 227-236.

Cavalier-Smith T, Chao EEY. 2003. Phylogeny and classification of phylum Cercozoa (Protozoa). Protist 154: 341-358.

Delfosse P, Reddy AS, Legrève A, Devi KT, Abdurahman MD, Maraite H, Reddy DVR. 2000. Serological methods for detection of Polymyxa graminis, an obligate root parasite and vector of plant viruses. Phytopathology 90: 537-545.

Dick MW. 1997. Fungi, flagella and phylogeny. Mycological Research 101: 385-394.

Down GJ, Clarkson JM. 2002. Development of a PCR-based diagnostic test for Spongospora subterranea f.sp nasturtii, the causal agent of crook root of watercress (Rorippa nasturtium-aquaticum). Plant Pathology 51: 275-280.

Down GJ, Grenville LJ, Clarkson JM. 2002. Phylogenetic analysis of Spongospora and implications for the taxonomic status of the plasmodiophorids. Mycological Research 106: 1060-1065.

Faggian R, Bulman SR, Lawrie AC, Porter IJ. 1999. Specific polymerase chain reaction primers for the detection of Plasmodiophora brassicae in soil and water. Phytopathology 89: 392-397.

Graf H, Fahling M, Siemens J. 2004. Chromosome polymorphism of the obligate biotrophic parasite Plasmodiophora brassicae. Journal of Phytopathology 152: 86-91.

Graf H, Sokolowski F, Klewer A, Diederichsen E, Luerssen H, Siemens J. 2001. Electrophoretic karyotype of the obligate biotrophic parasite Plasmodiophora brassicae Wor. Journal of Phytopathology 149: 313-318.

Harrison JG, Lowe R, Wallace A, Williams NA. 1994. Detection of Spongospora subterranea by ELISA using monoclonal antibodies. In: Schots A, Dewey FM, Oliver R, eds. Modern Assays for Plant Pathogenic Fungi: Identification, Detection and Quantification. Wallingford: CAB International, 23-27.

Harrison JG, Rees EA, Barker H, Lowe R. 1993. Detection of spore balls of Spongospora subterranea on potato tubers by enzyme-linked immunosorbent assay. Plant Pathology 42: 181-186.

Ito S, Ichinose H, Yanagi C, Tanaka S, Kameya-Iwaki M, Kishi F. 1999. Identification of an in planta-induced mRNA of Plasmodiophora brassicae. Journal of Phytopathology 147: 79-82.

Ito S, Maehara T, Maruno E, Tanaka S, Kameya-Iwaki M, Kishi F. 1999. Development of a PCR-based assay for the detection of Plasmodiophora brassicae in soil. Journal of Phytopathology 147: 83-88.

Ito S, Maehara T, Tanaka S, Kameya-Iwaki M, Yano S, Kishi F. 1997. Cloning of a single-copy DNA sequence unique to Plasmodiophora brassicae. Physiological and Molecular Plant Pathology 50: 289-300.

Ito S, Nakamura T, Matsumoto T, Maehara T, Tanaka S, Kameya-Iwaki M, Kishi F. 1998. Characterization of DNA sequences cloned from resting spores of Plasmodiophora brassicae. Journal of Phytopathology 146: 143-147.

Ito S, Yano S, Tanaka S, Kameya-Iwaki M. 1994. The use of resting spore spheroplasts in the DNA analysis of Plasmodiophora brassicae. Annals of the Phytopathological Society of Japan 60: 491-495.

Kingsnorth CS, Asher MJC, Keane GJP, Chwarszczynska DM, Luterbacher MC, Mutasa-Göttgens ES. 2003. Development of a recombinant antibody ELISA test for the detection of Polymyxa betae and its use in resistance screening. Plant Pathology 52: 673-680.

Kingsnorth CS, Kingsnorth AJ, Lyons PA, Chwarszczynska DM, Asher MJC. 2003. Real-time analysis of Polymyxa betae GST expression in infected sugar beet. Molecular Plant Pathology 4: 171-176.

Klewer A, Luerben H, Graf H, Siemens J. 2001. Restriction fragment length polymorphism markers to characterize Plasmodiophora brassicae single-spore isolates with different virulence patterns. Journal of Phytopathology 149: 121-127.

Lange L, Heide M, Hobolth L, Olson LW. 1989. Serological detection of Plasmodiophora brassicae by dot immunobinding and visualization of the serological reaction by scanning electron microscopy. Phytopathology 79: 1066-1071.

Legrève A, Vanpee B, Risopoulos J, Ward E, Maraite H. 1996. Characterization of Polymyxa sp. associated with the transmission of Indian Peanut Clump Virus. In: Sherwood JL, Rush CM, eds. Proceedings of the Third Symposium of the International Working Group on Plant Viruses with Fungal Vectors. Denver: American Society of Sugar Beet Technologists, 157-160.

Legrève A, Delfosse P, Maraite H. 2002. Phylogenetic analysis of Polymyxa species based on nuclear 5.8S and internal transcribed spacers ribosomal DNA sequences. Mycological Research 106: 138-147.

Manzanares-Dauleux MJ, Barret P, Thomas G. 2000. Development of a pathotype specific SCAR marker in Plasmodiophora brassicae. European Journal of Plant Pathology 106: 781-787.

Manzanares-Dauleux MJ, Divaret I, Baron F, Thomas G. 2001. Assessment of biological and molecular variability between and within field isolates of Plasmodiophora brassicae. Plant Pathology 50: 165-173.

Merz U, Walsh JA, Harrison JG. 1996. The potential of serology for the detection of Spongospora subterranea f.sp. subterranea in soil. In: Marshall G, ed Diagnostics in Crop Production: 1996 BCPC Symposium Proceedings no 65. Farnham, Surrey: British Crop Protection Council, 269-274.

Möller M, Harling R. 1996. Randomly amplified polymorphic DNA (RAPD) profiling of Plasmodiophora brassicae. Letters in Applied Microbiology 22: 70-75.

Mutasa ES, Chwarszczynska DM, Adams MJ, Ward E, Asher MJC. 1995. Development of PCR for the detection of Polymyxa betae in sugar-beet roots and its application in field studies. Physiological and Molecular Plant Pathology 47: 303-313.

Mutasa ES, Chwarszczynska DM, Asher MJC. 1996. Single-tube, nested PCR for the diagnosis of Polymyxa betae infection in sugar beet roots and colorimetric analysis of amplified products. Phytopathology 86: 493-497.

Mutasa ES, Ward E, Adams MJ, Collier CR, Chwarszczynska DM, Asher MJC. 1993. A sensitive DNA-probe for the detection of Polymyxa betae in sugar-beet roots. Physiological and Molecular Plant Pathology 43: 379-390.

Mutasa-Göttgens ES, Chwarszczynska DM, Halsey K, Asher MJC. 2000. Specific polyclonal antibodies for the obligate plant parasite Polymyxa - a targeted recombinant DNA approach. Plant Pathology 49: 276-287.

Pilgeram AL, Duffus JE. 1993. RAPD analysis of Polymyxa betae. In: Hiruki C, ed Proceedings of the Second Symposium of the International Working Group on Plant Viruses with Fungal Vectors. Denver: American Society of Sugar Beet Technologists., 91-93.

Schnepf E, Kuhn SF, Bulman S. 2000. Phagomyxa bellerocheae sp nov and Phagomyxa odontellae sp nov., Plasmodiophoromycetes feeding on marine diatoms. Helgoland Marine Research 54: 237-241.

Subr ZW, Kastirr U, Kuhne T. 2002. Subtractive cloning of DNA from Polymyxa graminis - an obligate parasitic plasmodiophorid. Journal of Phytopathology 150: 564-568.

van de Graaf PV, Lees AK, Cullen DW, Duncan JM. 2003. Detection and quantification of Spongospora subterranea in soil, water and plant tissue samples using real-time PCR. European Journal of Plant Pathology 109: 589-597.

van de Peer Y, Baldauf S, Doolittle WF, Meyer AA. 2000. An updated and comprehensive phylogeny of the rRNA crown eukaryotes based on rate calibrated evolutionary distances. Journal of Molecular Evolution 51: 565-576.

Wakeham AJ, White JG. 1996. Serological detection in soil of Plasmodiophora brassicae resting spores. Physiological and Molecular Plant Pathology 48: 289-303.

Wallace A, Williams NA, Lowe R, Harrison JG. 1995. Detection of Spongospora subterranea using monoclonal antibodies in ELISA. Plant Pathology 44: 355-365.

Wallenhammar AC, Arwidsson O. 2001. Detection of Plasmodiophora brassicae by PCR in naturally infested soils. European Journal of Plant Pathology 107: 313-321.

Walsh JA, Merz U, Harrison JG. 1996. Serological detection of spore balls of Spongospora subterranea and quantification in soil. Plant Pathology 45: 884-895.

Walsh JA, Merz U. 1996. Serological detection of Spongospora subterranea f.sp. subterranea. In: Marshall G, ed Diagnostics in Crop Production: 1996 BCPC Symposium Proceedings no 65. Farnham, Surrey: British Crop Protection Council, 151-156.

Wang Q, Han C, Li D, Yu J, Wang H, Cai Z, Liu Y. 1999. The cloning and PCR detection of genomic DNA fragment of Polymyxa betae. Mycosystema 18: 436-439.

Ward E, Adams MJ, Mutasa ES, Collier CR, Asher MJC. 1994. Characterization of Polymyxa species by restriction analysis of PCR-amplified ribosomal DNA. Plant Pathology 43: 872-877.

Ward E, Adams MJ. 1998. Analysis of ribosomal DNA sequences of Polymyxa species and related fungi and the development of genus- and species- specific PCR primers. Mycological Research 102: 965-974.

White JG, Wakeham AJ. 1995. Serological detection of resting spores of Plasmodiophora brassicae in soil. EPPO Bulletin 25: 75-80.

Yano S, Tanaka S, Ito S, Kameya-Iwaki M. 1997. Variations of random amplified polymorphic DNA (RAPD) patterns among field populations of Plasmodiophora brassicae. Annals of the Phytopathological Society of Japan 63: 179-182.

Other references

Felsenstein J. 1993. PHYLIP (Phylogeny Inference Package). Distributed by the author, Department of Genetics, University of Washington, Seattle.

Lee SB, Taylor JW. 1990. Isolation of DNA from fungal mycelia and single spores. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR Protocols. A Guide to Methods and Applications. San Diego, USA: Academic Press, 282-287.

Page RDM. 1996. TREEVIEW: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357-358.

Volossiouk T, Robb EJ, Nazar RN. 1995. Direct DNA extraction for PCR-mediated assays of soil organisms. Applied and Environmental Microbiology 61: 3972-3976.

White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR Protocols. A Guide to Methods and Applications. San Diego, USA: Academic Press, 315-322.

Zolan ME, Pukkila PJ. 1986. Inheritance of DNA methylation in Coprinus cinereus. Molecular and Cellular Biology 6: 195-200.

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