Animated Dictionnary Definition

Interface

The surface that forms the boundary between two systemsd i.e. the cell membrane is the interface between the cell content and the external environment.

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Arlequin 3.0: The goal of Arlequin is to provide the average user in population genetics with quite a large set of basic methods and statistical tests, in order to extract information on genetic and demographic features of a collection of population samples. The graphical interface is designed to allow users to rapidly select the different analyses they want to perform on their data. We felt important to be able to explore the data, to analyze several times the same data set from different perspectives, with different selected options. The statistical tests implemented in Arlequin have been chosen such as to minimize hidden assumptions and to be as powerful as possible. Thus, they often take the form of either permutation tests or exact tests, with some exceptions. Finally, we wanted Arlequin to be able to handle genetic data under many different forms, and to try to carry out the same types of analyses irrespective of the format of the data.
BEAUty and BEAST: BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It is not intended solely as a method of reconstructing phylogenies but also as a framework for testing evolutionary hypotheses without conditioning on a single tree topology. BEAST uses MCMC to average over tree space, so that each tree is weighted proportional to its posterior probability. We include a simple to use user-interface program for setting up standard analyses and a suit of programs for analysing the results.
BioEdit: BioEdit is a biological sequence alignment editor written for Windows 95/98/NT. A rich, intuitive multiple document interface with many convenient features makes alignment, manipulation and viewing of sequences relatively quick and easy on your desktop computer.
Deep View SPDB viewer: Swiss-PdbViewer is an application that provides a user friendly interface allowing to analyse several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid mutations, H-bonds, angles and distances between atoms are easy to obtain thanks to the intuitive graphic and menu interface.
EMBOSS programs under Pise: Huge set of programs with web interfaces. This page is not maintained anymore.
Gene Designer 2.0 : FREE bioinformatics software application. The dynamic drag-and-drop sequence functionality to create genes with Gene Designer has been awarded US Patent #7,805,252. This unique interface technology created by DNA2.0 scientists enables users to quickly represent nucleic acid sequences and to move them around with ease.
GeneSpring: cutting-edge tools for expression analysis: GeneSpring is widely regarded as the gold standard for expression data analysis. When you use GeneSpring, you join thousands of elite scientists worldwide who depend on its sophisticated analysis techniques to advance their research. Designed to meet the needs of the individual researcher, GeneSpring seamlessly interfaces with Silicon Genetics Signet software, which provides a highly scalable platform for enterprise- level genomic research
Genstat at VSN: GenStat is a powerful and flexible statistical system that offers you the benefits of a fully interactive system with state-of-the art graphical facilities, friendly graphical user interface plus powerful statistical programming facilities.
mFOLD: The objective of this web server is to provide easy access to RNA and DNA folding and hybridization software to the scientific community at large. By making use of universally available web GUIs (Graphical User Interfaces), the server circumvents the problem of portability of this software. Detailed output, in the form of structure plots with or without reliability information, single strand frequency plots and energy dot plots, are available for the folding of single sequences.
Phylogeny and Reconstructing Phylogenetic Trees: These few pages describe the problem of reconstructing phylogenetic trees with the help of a Java applet. I wrote the applet to discover more about the java language and the API interface. I\'ve been interested in phylogenetic trees for some time and thought they would make a good subject. -- Dave Joyce
PLoS Biology: PLoS Biology features works of exceptional significance in all areas of biological science, from molecules to ecosystems, including works at the interface with other disciplines, such as chemistry, medicine, and mathematics.All works published in the PLoS Biology are open access. Everything is immediately available without cost to anyone, anywhere to read, download, redistribute, include in databases, and otherwise use subject only to the condition that the original authorship is properly attributed. Copyright is retained by the author
SAT: Sequence Alignment Teacher: Dynamic programming (DP) is a general optimization strategy that is successfully used across various disciplines of science. In bioinformatics, it is widely applied in calculating the optimal alignment between pairs of protein or DNA sequences. These alignments form the basis of new, verifiable biological hypothesis. Despite its importance, there are no interactive tools available for training and education on understanding the DP algorithm. Here, we introduce an interactive computer application with a graphical interface, for the purpose of educating students about DP. The program displays the DP scoring matrix and the resulting optimal alignment(s), while allowing the user to modify key parameters such as the values in the similarity matrix, the sequence alignment algorithm version and the gap opening/extension penalties.
Serial Cloner: Serial Cloner is a Molecular Biology software. It provides tools with an intuitive interface that assists you in DNA cloning, sequence analysis and visualization.
Staden Documentation: The manual describes, in turn, each of the main programs in the package: gap4, and then pregap4 and its associated programs such as trev, and then spin. This is followed by a description of the graphical user interface, the ZTR, SCF and Experiment file formats used by our software, UNIX manpages for several of the smaller programs, and finally a list of papers published about the software. The description for each of the programs includes an introductory section which is intended to be sufficient to enable people to start using them, although in order to get the most from the programs, and to find the most efficient ways of using them we recommend that the whole manual is read once. The mini-manual is made up from the introductory sections for each of the main programs.
STING: Sequence To and withIN Graphics: STING is a WWW tool for the simultaneous display of information about macromolecular structure (in STING's Graphics Frame) and sequence (in STING's Sequence Frame). Special attention is given to MacroMolecular INTERFACE analysis.
Swiss PDB Viewer: Swiss-PdbViewer is an application that provides a user friendly interface allowing to analyse several proteins at the same time. The proteins can be superimposed in order to deduce structural alignments and compare their active sites or any other relevant parts. Amino acid mutations, H-bonds, angles and distances between atoms are easy to obtain thanks to the intuitive graphic and menu interface.
Moreover, Swiss-PdbViewer is tightly linked to Swiss-Model, an automated homology modelling server running at Glaxo Welcome Experimental Research in Geneva.
Usable Web: Usable Web is a collection of links about information architecture, human factors, user interface issues, and usable design specific to the World Wide Web

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The Molecular Biology Notebook Online
A Beginners' Guide to Molecular Biology

Interface

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The Molecular Biology Notebook OnlineA Beginners' Guide to Molecular Biology

Interface

Related Links

New Links

The Molecular Biology Notebook Online
A Beginners' Guide to Molecular Biology