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Chris Rawlings

Contact Information

Summary

Principal Investigator Development of population genetic models and statistical methods for inferring parameters Integration and exploitation of data derived from post-genomic technologies Integration of 'omics databases and novel approaches to data analysis and annotation Lawes Trust Studentship: Database intergration and text mining methods - identifying crop drought response pathways Leader Integration of 'omics databases and novel approaches to data analysis and annotation Lawes Trust Studentship: Database intergration and text mining methods - identifying crop drought response pathways

Projects

• Bioinformatics Consultancies

Publications

Reference Type: Journal Article

2010

• Hassani-Pak, K. , Legaie, R. , Canevet, C. , Van Den Berg, H. A. , Moore, J. D. and Rawlings, C. J. (2010) "Enhancing Data Integration with Text Analysis to Find Proteins Implicated in Plant Stress Response", Journal of Integrative Bioinformatics, 7, 121
  See Paper

2009

• Lysenko, A. , Hindle, M. M. , Taubert, J. , Saqi, M. and Rawlings, C. J. (2009) "Data Integration for Plant Genomics--Exemplars from the Integration of Arabidopsis Thaliana Databases", Brief Bioinform, 6, 676-693
  See Paper

2008

• Pesch, R. , Lysenko, A. , Hindle, M. , Hassani-Pak, K. , Thiele, R. , Rawlings, C. , Koehler, J. and Taubert, J. (2008) "Graph-Based Sequence Annotation Using a Data Integration Approach", J Integrative Bioinformatics, 5
  See Paper

2007

• Winnenburg, R. , Urban, M. , Beacham, A. , Baldwin, T. K. , Holland, S. , Lindeberg, M. , Hansen, P. D. , Rawlings, C. J. , Hammond-Kosack, K. E. and Koehler, J. (2007) "Phi-Base Update: Additions to the Pathogen-Host Interactions Database", Nucl. Acids Res., In Press
  See Paper
• Mitchell, R. , Castells-Brooke, N. , Taubert, J. , Verrier, P. J. , Leader D.J. and Rawlings, C. J. (2007) "Wheat Estimated Transcipt Server (Whets): A Tool to Provide Best Estimate of Hexaploid Wheat Transcript Sequence", Nucl. Acids Res., 1-4
  See Paper
• Baldwin, T. K. , Winnenburg, R. , Urban, M. , Rawlings, C. , Köhler, J. and Hammond-Kosack, K. E. (2007) "Phi-Base: A Database of Experimentally Verified Pathogenicity, Virulence and Effector Genes in Fungal, Oomycete and Bacterial Pathogens of Animals and Plants.", In Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento July 2007
  See Paper

2006

• Winnenburg, R. , Baldwin, T. K. , Urban, M. , Rawlings, C. , Kohler, J. and Hammond-Kosack, K. E. (2006) "Phi-Base: A New Database for Pathogen Host Interactions", Nucleic Acids Research, 34, D459-D464
  See Paper
• Kohler, J. , Baumbach, J. , Taubert, J. , Specht, M. , Skusa, A. , Ruegg, A. , Rawlings, C. , Verrier, P. and Philippi, S. (2006) "Graph-Based Analysis and Visualization of Experimental Results with Ondex", Bioinformatics, 22, 1383-1390
  See Paper
• Baldwin, T. K., Winnenburg, R., Urban, M., Rawlings, C., Köhler, J. And Hammond-Kosack, K.E. (2006) "Phi-Base Provides Insights into Generic and Novel Themes of Pathogenicity. ", Mol. Plant. Microbe Interact. , 1451-1462
  See Paper

2004

• Köhler, J. , Rawlings, C. , Verrier, P. , Mitchell, R. , Skusa, A. , Ruegg, A. and Philippi, S. (2004) "Linking Experimental Results, Biological Networks and Sequence Analysis Methods Using Ontologies and Generalized Data Structures", In Silico Biology, 5, Manuscript number in online journal: 0005.

Reference Type: Conference Proceedings

2009

• Hassani-Pak, K. , Kuo, S. C. , Taubert, J. , Hanley, S. and Rawlings, C. (2009) "Integrative Methods to Support Phenotype-Genotype Research in Bioenergy Crops", ISMB/ECCB 2009

2007

• Taubert, J. , Hindle, M. , Hoekman, B. , Winnenburg, R. , Weile, J. , Sieren, K. P. , Baumbach, J. , Ernst, S. , Elsner, S. , Hassani-Pak, K. , Lysenko, A. , Philippi, S. , Yates, T. , Verrier, P. , Rawlings, C. and Koehler, J. (2007) "The Ondex Data Integration Framework.", Bioinformatics Open Source Conference (BOSC 2007)
• Hassani-Pak, K. , Hindle, M. , Taubert, J. , Winnenburg, R. , Rawlings, C. , Stoye, J. and Köhler, J. (2007) "Combining Sequence Similarity and Text Mining for Functional Annotation of Genes", 4th Integrative Bioinformatics conference (IB2007)

2004

• Rawlings, C. , Verrier, P. and Köhler, J. (2004) "Integration and Exploitation of Data Derived from Post-Genomic Technologies", BBSRC e-science workshop,

Reference Type: Conference Paper

2009

• Taubert, J. , Hindle, M. , Lysenko, A. , Weile, J. , Koehler, J. and Rawlings, C. (2009) "Linking Life Sciences Data Using Graph-Based Mapping", LNBI 5647, 16-30
  See Paper

List of Publications while at Rothamsted

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