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International Workshop |
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| FINAL PROGRAMME | |||||
| Monday 4th September 2006 | |||||
| 11:30 | Registration desk opens | ||||
| 12:30 | Lunch (buffet style) | ||||
| 13:10 | Welcome followed by some administrivia Jacob Koehler |
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| Session 1 Database Integration and Integrative Databases |
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| Chairman: Ralf Hofestaedt | |||||
| 13:20 keynote |
Semantic Integration, SRS and the Meaning of Life (Sciences) Steve Gardner (Biowisdom, UK) |
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| 14:00 | CoryneRegNet 2: An Integrative Bioinformatics Approach for Reconstruction and Comparison of Transcriptional Regulatory Networks in Prokaryotes Jan Baumbach, Karina Brinkrolf, Tobias Wittkop, Andreas Tauch and Sven Rahmann |
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| 14:25 | Analysing Microarray Data using the Multi-functional Immune Ontologiser Sabah Khalid, Karl Fraser, Mohsin Khan, Ping Wang, Xiaohui Liu and Suling Li |
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| 14:50 | The BioRS(TM) Integration and Retrieval System: An open system for distributed data integration Andreas Kaps, Konstantin Dyshlevoi, Klaus Heumann, Ralf Jost, Ioannis Kontodinas, Martin Wolff and Jean Hani |
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| 15:15 | Integration of Protein and Protein-Protein Interaction Data: Feasibility Report using Microsoft .NET Wolfgang Straßer, Doris Siegl, Kamil Önder and Johann Bauer |
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| 15:40 | Coffee break | ||||
| Chairman: David Wild | |||||
| 16:00 | BN++ - A Biological Information System Jan Küntzer, Torsten Blum, Andreas Gerasch, Christina Backes, Andreas Hildebrandt, Michael Kaufmann, Oliver Kohlbacher and Hans-Peter Lenhof |
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| 16:25 | MILAN - A medical information-system linking agents to metabolic networks B. Prins and R. Hofestädt |
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| 16:50 | Data Cleaning and Semantic Improvement in Biological Databases Daniele Apiletti, Giulia Bruno, Elisa Ficarra and Elena Baralis (presented by Giulia Bruno) |
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| 17:15 | Drinks and Poster Session | ||||
| 18:45 | Coach to Holiday Inn Hotel | ||||
| Tuesday 5th September 2006 | |||||
| 09:30 | Coach from Holiday Inn Hotel | ||||
| Session 2 Integrative Systems Biology - Modelling and Simulation |
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| Chairman: Joachim Selbig | |||||
| 10:00 keynote |
Top-down Modeling of Biochemical Networks, a Grand Challenge of Systems Biology Pedro Mendes (Virginia Bioinformatics Institute, USA) |
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| 10:40 | BASIS: an internet resource for network modelling Colin S. Gillespie, Darren J. Wilkinson, Daryl P. Shanley, Carole J. Proctor, Richard J. Boys and Thomas B.L. Kirkwood |
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| 11:05 | Coffee break | ||||
| Chairman: Paul Verrier | |||||
| 11:20 | The implications for Bioinformatics of integration across physical scales T.C. Hodgman, Y. Ugartechea-Chirino, G. Tansley and I. Dryden |
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| 11:45 | A Graphical Notation to Describe the Logical Interactions of Biological Pathways Stuart L. Moodie, Anatoly Sorokin, Igor Groyanin and Peter Ghazal |
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| 12:10 | Exact and Approximate Stochastic Simulations of the MAPK Pathway and Comparisons of Simulations’ Results Vilda Purutcuoglu and Ernst Wit |
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| 12:35 | Lunch (buffet style) | ||||
| Session 3 Integrative Systems Biology - Networks |
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| Chairman: Klaus Prank | |||||
| 13:30 keynote |
BioComputing@Biopolis - Opening New Frontiers at the Interface of Computing, Biology and Medicine Gunaretnam Rajagopal (Bioinformatics Institute, Singapore) |
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| 14:10 | Statistical Embedding in Complex Biosystems Enrico Capobianco |
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| 14:35 | An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions Fiona Browne, Haiying Wang, Huiru Zheng and Francisco Azuaje (presented by Browne, F.) |
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| 14:50 | Multi-model inference of network properties from incomplete data Michael P.H. Stumpf and Thomas Thorne |
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| 15:15 | Coffee break | ||||
| Session 4 Data Analysis and Interpretation - Transcriptomics |
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| Chairman: Sue Wilson | |||||
| 15:45 | Co-expressed gene groups analysis (CGGA): An automatic tool for the interpretation of microarray experiments Ricardo Martinez, Nicolas Pasquier, Claude Pasquier, Martine Collard and Lucero Lopez-Perez |
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| 16:10 | Combining biomedical knowledge and transcriptomic data to extract new knowledge on genes Emilie Guérin Gwenaëlle Marquet, Julie Chabalier, Marie-Bérengère Troadec, Christiane Guguen-Guillouzo, Olivier Loréal, Anita Burgun and Fouzia Moussouni(presenter) |
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| 16:35 | Inference of Gene Coexpression Networks by Integrative Analysis across Microarray Experiments Laura L. Elo, Riitta Lahesmaa and Tero Aittokallio |
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| 17:00 | Modelling Microarray Data: Interpreting and communicating the biological results Y.E. Pittelkow and S.R.Wilson |
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| 17:25 | Targeted Projection Pursuit Tool for Gene Expression Visualisation Joe Faith and Michael Brockway |
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| 17:50 | Poster session and Bar opens | ||||
| 19:00 | Coach to Holiday Inn Hotel (if not staying for dinner) | ||||
| 19:30 | Conference dinner | ||||
| 22:00 | Coach to Holiday Inn Hotel | ||||
| Wednesday 6th September 2006 | |||||
| 09:30 | Coach from Holiday Inn Hotel | ||||
| Session 5 Data Analysis and Interpretation |
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| Chairman: Uwe Scholz | |||||
| 10:00 keynote |
Services, Semantics and Workflows in eScience Tom Oinn (European Bioinformatics Institute, UK) |
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| 10:40 | Metabolite profiles as a reflection of physiological status - a methodological validation Matthias Steinfath, Dirk Repsilber, Manuela Hische, Nicolas Schauer, Alisdair R. Fernie and Joachim Selbig |
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| 11:05 | A First Step towards Learning which uORFs Regulate Gene Expression Selpi, Christopher H. Bryant, Graham J.L. Kemp and Marija Cvijovic |
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| 11:30 | Coffee break | ||||
| Chairman: Peter Rice | |||||
| 11:50 | Prediction of transcription factor binding to DNA using rule induction methods Mikael Huss and Karin Nordström |
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| 12:15 | Functional diversity within protein superfamilies James Casbon and Mansoor Saqi |
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| 12:40 | Closing remarks | ||||
| 12:50 | Lunch (buffet style) Depart |
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