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International Symposium on |
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| PROGRAMME (As presented) |
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A number of participants created some notes on the presentations. These can be found at http://friendfeed.com/ib2010. If you missed some detail it might be in there. |
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| Sunday 21st March 2010 | |||||
| 16:30 | IB2010 Symposium registration desk opens | ||||
| Monday 22nd March 2010 | |||||
| 08:30 | Registration desk opens | ||||
| Workshops & Tutorials | |||||
| 09:30 | Track 1 - ONDEX Tutorial | ||||
| 10:00 | Track 2 - EMERALD workshop | 12:00 | Buffet lunch | ||
| 1st Plenary Session Session chair: Chris Rawlings | |||||
| 13:00 | Welcome to IB2010 and Welcome to Cambridge | ||||
| 13:10 keynote |
Knowledge representation and ontologies in Systems Biology Nicolas Le Novere (EBI, England) Presentation slides |
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| 14:00 | Integrative Systems Biology Visualization with MAYDAY Symons, S;Zipplies, C;Battke, F;Nieselt, K Paper in JIB (Presentation slides) |
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| 14:25 | An integrated dataset for in silico drug discovery Cockell, S. J.;Weile, J;Lord, P;Wipat, C. E.;Andriychenko, D.;Pocock, M; Wilkinson, D. J.; Young, M.; Wipat, A. Paper in JIB (Presentation slides) |
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| 14:50 | Efficient Online Transcription Factor Binding Site Adjustment by Integrating Transitive Graph Projection with MoRAine 2.0 Wittkop, T; Rahmman, S; Baumbach, J Paper in JIB |
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| 15:15 | The LAILAPS Search Engine: A Feature Model for Relevance Ranking in Life Science Databases Lange, M.; Spies, K.; Colmsee, C.; Flemming, S.; Klapperstück, M.; Scholz, U. Paper in JIB (Presentation slides) |
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| 15:40 | Coffee break | ||||
| 16:10 | Quality controls in integrative approaches to detect errors and inconsistencies in biological databases Ghisalberti, G; Masseroli, M; Tettamanti, L Paper in JIB (Presentation slides) |
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| 16:35 | An integrative approach to modeling biological networks Memisevic, V; Milenkovic, T; Przulj, N Paper in JIB |
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| 17:00 | Enhancing Data Integration with Text Analysis to Find Genes Implicated in Plant Stress Response Hassani-Pak, K; Legaie, R; Canevet, C; Moore, J; Rawlings, C Paper in JIB (Presentation slides) |
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| 17:25 | Data integration using scanners with SQL output - The Bioscanners project at sourceforge Groth, D; Hartmann, S; Friemel, M; Hill, N; Müller, S; Poustka, AJ; Panopoulou, G Paper in JIB (Presentation slides) |
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| 17:50 - 19:45 |
Poster Session, Software Demonstrations & reception EBI will be presenting some of their packages |
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| 20:00 | Evening meal in College | ||||
| Tuesday 23rd March 2010 | |||||
| 2nd Plenary Session Session chair: Ralf Hofestaedt | |||||
| 09:00 keynote |
Doing more with less: data sharing and data integration in an age of economic contraction, using Semantic Web and Web 2.0 technologies David Shotton (Oxford, England) (Presentation slides) |
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| 09:50 | MEMOPS: Data modelling and automatic code generation Fogh, RH; Boucher, W; Ionides, JMC; Vranken, WF; Stevens, TJ; Laue, ED Paper in JIB (Presentation slides) |
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| 10:15 | An evaluation of the performance of three semantic background knowledge sources in comparative anatomy van Ophuizen, EAA; Leunissen, JAM Paper in JIB |
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| 10:40 | Coffee break | ||||
| 11:10 | Novel Developments of the MetaCrop Information System for Facilitating Systems Biological Approaches Hippe, K; Colmsee, C; Czauderna, T; Grafahrend-Belau, E; Junker, BH; Klukas, C; Scholz, U; Schreiber, F; Weise, S Paper in JIB |
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| 11:35 | An Ontology of Description of Drug Design Investigations Qi, D; King, R.D.; Hopkins, A; Bickerton, G.R.J; Soldatova, L.N Paper in JIB (Presentation slides) |
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| 12:00 | Comparison and Integration of Target Prediction Algorithms for microRNA Studies Zhang, Y; Verbeek, F. J. Paper in JIB |
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| 12:30 | Buffet lunch | ||||
| 3rd Plenary Session Session chair: Matthias Lange | |||||
| 14:00 keynote |
Atlas-Based Bioinformatics Richard Baldock (Edinburgh, Scotland). Presented by Chris Rawlings (Presentation slides) |
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| 14:50 | Mining and analysing spatio-temporal patterns of gene expression in an integrative database framework Belmamoune, M; Verbeek, FJ; Potikanond, D Paper in JIB |
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| 15:15 | A Model of Phospholipid Biosynthesis in Tumor in Response to an Anticancer Agent in Vivo Behzadi, M; Demidem, A; Morvan, D; Schwartz, L; Stepien, G; Steyaert, JM Paper in JIB |
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| 15:40 | Prediction of thioredoxin and glutaredoxin target proteins by identifying reversibly oxidized cysteinyl residues Lee, H-M; Dietz, K-J; Hofestaedt, R Paper in JIB |
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| 16:05 | Study of the triplet periodicity phase shifts in genes Korotkov, E; Korotkova, M Paper in JIB (Presentation slides) |
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| 16:30 | Coffee break | ||||
| 17:00 | ExPlanes: Exploring Planes in Triplet Data Schwenk, B; Selbig, J; Ben-Zion, Y; Holschneider, M Paper in JIB (Presentation slides) |
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| 17:25 | Comparison of different algorithms for simultaneous estimation of multiple parameters in kinetic metabolic models Murtuza Baker, S; Schallau, K; Junker, BH Paper in JIB (Presentation slides) |
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| 17:50 | Clustering of gene expression profiles: creating initialization-independent clusterings by eliminating unstable genes De Mulder, W; Martin, K; Boel, R. Paper in JIB (Presentation slides) |
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| 18:15 - 19:45 | Poster Session & Software demos EBI will be presenting some of their packages |
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| 20:00 | Conference Dinner “Churchill College” | ||||
| Wednesday 24th March 2010 | |||||
| 4th Plenary Session Session chair: Gos Micklem | |||||
| 09:00 keynote |
Next generation sequencing: Biological insight requires more than data handling capabilities Thomas Werner (Genomatix Software GmbH, Germany) Presentation slides (29Mb!) |
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| 09:50 | Complementarity of network and sequence information in homologous proteins Memisevic, V; Milenkovic, T; Przulj, N Paper in JIB |
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| 10:15 | Integrating Phenotypic Data For Depression Butler, AW; Cohen-Woods, S; Farmer, A; McGuffin, P; Lewis, CM Paper in JIB (Presentation slides) |
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| 10:40 | Coffee break | ||||
| 11:10 | Uncovering the Expression Patterns of Chimeric Transcripts Using Surveys of Affymetrix GeneChips Rowsell, J; da Silva Camargo, R; Langdon, W B; Stalteri, M A; Harrison, A P Paper in JIB (Presentation slides) |
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| 11:35 | SNPSelector: a tool for identification and scoring of SNPs associated to target genes Calabria, A; Mosca, E; Viti, F; Merelli, I; Milanesi, L Paper in JIB (Presentation slides) |
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| 12:00 | Noise tolerance of multiple classifier systems in data integration-based gene function prediction Rè, M; Valentini, G Paper in JIB |
12:30 | Buffet lunch and then Depart | ||
| 14:00 | Post-symposium meetings Track 1 - Ondex SABR project Track 2 - GENESYS & STOMP workshop |
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| Thursday 25th March 2010 | |||||
| 09:00 | Post-symposium meetings GENESYS & STOMP workshop |
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