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International Workshop |
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| FINAL PROGRAMME | |||||
| Monday 10th September 2007 | |||||
| 11:30 | Registration desk opens | ||||
| 12:30 | Lunch (buffet style) | ||||
| 13:10 | Welcome followed by some administrivia Jacob Köhler and Martin Kuiper |
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| Chairman: Ralf Hofestädt | |||||
| 13:20 keynote |
Understanding interactomes by data integration Søren Brunak (Technical University of Denmark) |
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| Session 1 Database Integration and Integrative Databases |
14:00 | A Methodology for Comparative Functional Genomics Alam, I; Cornell, M; Soanes, D M; Hedeler, C; Wong, H M; Rattray, M; Hubbard, S J; Talbot, N J; Oliver, S J; Paton, N W |
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| 14:25 | Community-based Linking of Biological Network Resources: Databases, Formats and Tools Telgkamp, M.; Koschützki, D.; Schwöbbermeyer, H.; Schreiber, F. |
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| 14:50 | Defining Mapping Mashups with BioXMash Hunt, E; Jakubowska, J; Boesinger, C; Norrie, M |
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| 15:15 | Data Linkage Graph: computation, querying and knowledge discovery of life science database networks Lange, M.; Himmelbach, A.; Schweizer, P.; Scholz, U. |
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| 15:40 | Coffee break | ||||
| Chairman: Falk Schreiber | |||||
| 16:00 | Exploring PSI-MI XML Collections Using DescribeX Samavi, R.; Consens, M.P.; Khatchadourian, C.; Topaloglou, T. |
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| 16:25 | VINEdb: a data warehouse for integration and interactive exploration of life science data Hariharaputran, S; Töpel, T; Brockschmidt, B; Hofestädt, R |
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| 16:50 | Analysis of integrated biomolecular networks using a generic network analysis suite Oesterheld, M; Mewes, HW; Stümpflen, V |
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| 17:15 | The OXL format for the exchange of integrated datasets Taubert, J; Sieren, KP; Hindle, M; Hoekman, B; Winnenburg, R; Philippi, S; Rawlings, C; Köhler, J. |
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| 17:40 | Poster Session | ||||
| 18:30 | Belgian Beer Festival | ||||
| Tuesday 11th September 2007 | |||||
| Chairman: Martin Kuiper | |||||
| 09:30 keynote |
myExperiment: A MySpace for the Self-serving Bioinformatician? Carole Goble (University of manchester, UK) |
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| Session 2 Integrative Systems Biology I |
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| 10:10 | Integration of Heterogeneous Cis-Antisense Gene Pair Data Sets Mapping onto the Human Genome Orlov, YL; Zhou, J; Kuznetsov, VA |
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| 10:35 | Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models Lister, AL; Pocock, M; Wipat, A |
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| 11:00 | Coffee break | ||||
| Chairman: Anil Wipat | |||||
| 11:20 | Stochastic effects in a compartmental model for mitotic checkpoint regulation Ibrahim, B; Dittrich, P; Diekmann, S; Schmitt, E |
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| 11:45 | Reactome: An integrated expert model of human molecular processes and access toolkit de Bono, B; Vastrik, I; D'Eustachio, P; Schmidt, E; Gopinath, G; Croft, D; Gillespie, M; Jassal, B; Lewis, S; Matthews, L; Wu, G; Birney, E; Stein, L |
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| 12:10 | A High-Level Petri Net Framework for Genetic Regulatory Networks Banks, R; Steggles, LJ |
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| 12:35 | Lunch (buffet style) | ||||
| Chairman: Jacob Köhler | |||||
| 13:30 keynote |
Structures in systems biology Pedro Beltrao1, Christina Kiel and Luis Serrano (CRG-EMBL Systems Biology Unit, Spain) |
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| Session 3 Integrative Systems Biology II |
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| 14:10 | From MIN model to ordinary differential equations Yartseva, A; Devillers, R; Klaudel, H; Kepes, F |
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| 14:35 | GeneBrowser: an approach for integration and functional classification of genomics data Arrais, J.; Santos, B.; Fernandes, J.; Carreto, L. |
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| 14:50 | Functional and Transcriptional Coherency of Modules in the Human Protein Interaction Network Futschik, ME; Chaurasia, G; Tschaut, A; Russ, J; Babu, MM; Herzel, H |
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| 15:15 | Coffee break | ||||
| Chairman: Thodoros Topaloglou | |||||
| Session 4 Data Analysis and Interpretation |
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| 15:45 | Mining for Single Nucleotide Polymorphisms in Expressed Sequence Tags Souche, E.L.; Hellemans, B.; Van Houdt, J.K.J.; Canario, A.; Klages, S.; Reinhardt, R.; Volckaert, F.A.M. |
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| 16:10 | Mapping protein information to disease terminologies Mottaz, A.; Yip, Y.L.; Ruch, P.; Veuthey, A.-L. |
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| 16:35 | Developmental Anatomy Ontology of Zebrafish - An Integrative semantic framework Belmamoune, M.; Verbeek, F.J. |
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| 17:00 | CIDA: An integrated software for the design, characterisation and global comparison of microarrays Khalid, S; Khan, M; Symonds, A; Fraser, K; Wang, P; Liu, X; Li, S |
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| 17:25 | Poster session | ||||
| 19:30 | Conference dinner | ||||
| Wednesday 12th September 2007 | |||||
| Chairman: Paul Verrier | |||||
| 09:30 keynote |
Integrative Drug Discovery David Searls (GlaxoSmithKline Pharmaceuticals, USA) |
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| Session 5 Data Classification |
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| 10:10 | Supervised classification of combined copy number and gene expression data Riccadonna, S; Jurman, G; Merler, S; Paoli, S; Quattrone, A; Furlanello, C |
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| 10:35 | IMS2 -- An integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath Baumbach, J; Bunkowski, A; Lange, S; Oberwahrenbrock, T; Kleinboelting, N; Rahmann, S; Baumbach, JI |
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| 11:00 | Prediction of protein-protein interactions using one-class classification methods and integrating diverse biological data Reyes, J. A.; Gilbert, D. R. |
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| 11:25 | Coffee break | ||||
| Chairman: Thoralf Töpel | |||||
| 11:45 | Monophyletic clustering and characterization of protein families Zhang, J.; Zhao, Z.; Evershed, J.; Li, G. |
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| 12:10 | A Tool for Evaluating Strategies for Grouping of Biological Data Jakoniene, V; Lambrix, P |
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| 12:35 | Closing remarks | ||||
| 12:40 | Lunch (buffet style) and Depart |
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