News › Computing boost for Rothamsted's science
30 July 2012
Rothamsted Research has added TimeLogic's latest J1-series Field Programmable Gate Array (FPGA) hardware to their computational tools platform. This sophisticated technology will help Rothamsted scientists deliver the knowledge and innovation for environmentally sustainable solutions for food and energy agriculture, for example its 20:20 Wheat ® Programme.
TimeLogic's DeCypher systems greatly increase the speed of sequence comparison by combining custom field programmable gate array (FPGA) circuitry with optimized implementations of BLAST, Smith-Waterman, Hidden Markov Model and gene modeling algorithms. With the inclusion of this additional TimeLogic hardware, Rothamsted researchers now have a sizeable DeCypher system in-house, which significantly enhances their high-throughput genome annotation efforts.
Contacts› Chris Rawlings and Jan Taubert
Notes to EditorsAbout TimeLogic
TimeLogic, a division of Active Motif, Inc, is the world leader in hardware accelerated bioinformatics search tools which accelerate genome annotation by combining optimized bioinformatics applications with powerful FPGA-based PCIe accelerator cards. This blend of specialized hardware and optimized software provides a perfect combination of performance, accuracy and value. Furthermore, these systems are simple to maintain and scale easily. Utilizing a TimeLogic system reduces pressure on over-used CPU-clusters by off-loading BLAST, Smith-Waterman (SW) and Hidden Markov Model (HMM) tasks to a highly time and energy efficient solution. From the earliest genome sequencing projects in the 1990’s to the largest metagenomics projects undertaken to date, TimeLogic has provided the enabling technology to make this research possible. Active Motif/TimeLogic operates globally through its corporate headquarters in Carlsbad, California, European headquarters in Rixensart, Belgium and Japanese headquarters in Tokyo, Japan. Active Motif/TimeLogic applies a multi-disciplinary approach to create new and modify existing technologies to meet the current and future needs of life science researchers.
Find out more by visiting us at http://www.timelogic.com or contact Michael Murray at firstname.lastname@example.org
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Rothamsted is the longest running agricultural research station in the world, providing cutting-edge science and innovation for nearly 170 years. Our mission is to deliver the knowledge and new practices to increase crop productivity and quality and to develop environmentally sustainable solutions for food and energy production. Our strength lies in our integrated, multidisciplinary approach to research in plant and soil science.
Rothamsted Research receives strategic funding from the Biotechnology and Biological Sciences Research Council (BBSRC) . It is the longest running agricultural research station in the world, developing environmentally sustainable solutions for food and energy production through science and innovation for nearly 170 years.
BBSRC is the UK funding agency for research in the life sciences and the largest single public funder of agriculture and food-related research.
Sponsored by Government, BBSRC's budget for 2011-12 is around £445M which it is investing in a wide range of research that makes a significant contribution to the quality of life in the UK and beyond and supports a number of important industrial stakeholders, including the agriculture, food, chemical, healthcare and pharmaceutical sectors.
BBSRC provides institute strategic research grants to the following:
The Babraham Institute, Institute for Animal Health, Institute for Biological, Environmental and Rural Sciences (Aberystwyth University), Institute of Food Research, John Innes Centre, The Genome Analysis Centre, The Roslin Institute (University of Edinburgh) and Rothamsted Research.
The Institutes conduct long-term, mission-oriented research using specialist facilities. They have strong interactions with industry, Government departments and other end-users of their research.
For more information see: www.bbsrc.ac.uk
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Rothamsted Research receives
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