News › New pathogen resource launched
10 January 2012
A new resource to help researchers find ways to combat agricultural pathogens, called PhytoPath, is launched today. PhytoPath, which was developed with funding from BBSRC, integrates genome-scale data of important plant pathogen species with literature-curated information about the phenotypes of host infection. This resource could make it easier for researchers to understand the origins of crop diseases and devise new strategies to control them.
PhytoPath uses the Ensembl Genomes browser to provide access to complete genome assembly and gene models of agriculturally important fungal and oomycete plant pathogens. It links genes to experimentally verified functional information on disease progression in the host using data from PHI-base, a curated resource that describes interactions between pathogens and their hosts as well as the intervention targets of commercially used anti-infective chemistries.
Related links› PhytoPath: an Integrated resource for comparative phytopathogen genomics
Contacts› Kim Hammond-Kosack, Jacek Grzebyta, Martin Urban and Mansoor Saqi
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The European Bioinformatics Institute (EBI) is part of the European Molecular Biology Laboratory (EMBL) and is located on the Wellcome Trust Genome Campus in Hinxton near Cambridge, UK. The EBI grew out of EMBL's pioneering work in providing public biological databases to the research community. It hosts some of the world's most important collections of biological data, including DNA sequences (ENA), protein sequences (UniProt), animal genomes (Ensembl), 3D structures (the Protein Databank in Europe), data from gene expression experiments (ArrayExpress), protein-protein interactions (IntAct) and pathway information (Reactome). EMBL-EBI hosts several research groups and its scientists continually develop new tools for the biocomputing community.
The European Molecular Biology Laboratory is a basic research institute funded by public research monies from 20 member states (Austria, Belgium, Croatia, Denmark, Finland, France, Germany, Greece, Iceland, Ireland, Israel, Italy, Luxembourg, the Netherlands, Norway, Portugal, Spain, Sweden, Switzerland and the United Kingdom) and associate member state Australia. Research at EMBL is conducted by approximately 85 independent groups covering the spectrum of molecular biology. The Laboratory has five units: the main Laboratory in Heidelberg, and outstations in Grenoble, Hamburg, Hinxton and Monterotondo (near Rome). The cornerstones of EMBL's mission are: to perform basic research in molecular biology; to train scientists, students and visitors at all levels; to offer vital services to scientists in the member states; to develop new instruments and methods in the life sciences and to actively engage in technology transfer activities. Around 190 students are enrolled in EMBL's International PhD programme. Additionally, the Laboratory offers a platform for dialogue with the general public through science communication activities such as lecture series, visitor programmes and the dissemination of scientific achievements.
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Rothamsted is the longest running agricultural research station in the world, providing cutting-edge science and innovation for nearly 170 years. Our mission is to deliver the knowledge and new practices to increase crop productivity and quality and to develop environmentally sustainable solutions for food and energy production. Our strength lies in our integrated, multidisciplinary approach to research in plant and soil science.
Rothamsted Research receives strategic funding from the Biotechnology and Biological Sciences Research Council (BBSRC) . It is the longest running agricultural research station in the world, developing environmentally sustainable solutions for food and energy production through science and innovation for nearly 170 years.
BBSRC is the UK funding agency for research in the life sciences and the largest single public funder of agriculture and food-related research.
Sponsored by Government, BBSRC's budget for 2011-12 is around £445M which it is investing in a wide range of research that makes a significant contribution to the quality of life in the UK and beyond and supports a number of important industrial stakeholders, including the agriculture, food, chemical, healthcare and pharmaceutical sectors.
BBSRC provides institute strategic research grants to the following:
The Babraham Institute, Institute for Animal Health, Institute for Biological, Environmental and Rural Sciences (Aberystwyth University), Institute of Food Research, John Innes Centre, The Genome Analysis Centre, The Roslin Institute (University of Edinburgh) and Rothamsted Research.
The Institutes conduct long-term, mission-oriented research using specialist facilities. They have strong interactions with industry, Government departments and other end-users of their research.
For more information see: www.bbsrc.ac.uk
Operates two national networks for monitoring insect populations in the UK. More...
Provides the research community access to a range of in situ state-of-the-art instrumentation in hydrologically isolated fields and farms to better address key issues in sustainable agriculture. More...
A database of interactions between pathogens and their hosts maintained at Rothamsted Research with international input. More...
These have been running since the mid 19th Century, provide a unique experimental system and archive of soil and plant samples. More...
Rothamsted Research receives
strategic funding from the BBSRC
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